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cDNA微阵列结合聚类分析探讨大鼠心肌缺血-再灌诱导的基因表达谱改变

Dynamic pattern of gene expression in rat hearts responding to transient ischemia/reperfusion detected by cDNA microarray and cluster analysis

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【作者】 袁灿; 赵震宇; 刘瑛; 吕青兰; 王秋鹏; 肖献忠;

【Author】 YUAN Can,ZHAO Zhen-yu,LIU Ying,L U·· Qing-lan,WANG Qiu-peng,XIAO Xian-zhong * (Department of Pathophysiology, Xiangya School of Medicine, Central South University,Changsha 410078, China)

【机构】 中南大学湘雅医学院病生教研室; 中南大学湘雅医学院病生教研室 长沙410078; 长沙410078; 长沙410078;

【摘要】 目的 :探讨大鼠心肌缺血 再灌诱导的基因表达谱改变 ,为揭示心肌内源性保护的分子机制提供新的线索和思路。方法 :采用反复短时间结扎及松解左冠状动脉主支构建大鼠心肌缺血 再灌反应动物模型 ,运用含 4 0 97个大鼠基因点的cDNA芯片检测大鼠心肌缺血 再灌处理后不同时间点 (1,3,6 ,12 ,2 4h)的基因表达情况 ,并采用SOM算法将具有相似表达模式的基因进行聚类。结果 :短时间缺血后再灌 1,3,6 ,12 ,2 4h分别有 75 ,779,2 0 5 ,15 5 ,16 6个基因表达发生改变。具有相同表达模式的基因被聚为 12类。结论 :心肌缺血 再灌可以诱导心肌的基因表达谱发生改变 ,具有相似表达模式的基因可能具有相似的功能或相似的表达调控机制。

【Abstract】 Objective To analyze the pattern of gene expression programs during rat myocardial ischemia/ reperfusion at multiple time points.Methods Rat model of myocardial ischemia/reperfusion was established by repeating the occlusion and relaxation of left coronary artery. cDNA microarray was used to analyze the pattern of gene expression programs in rat myocardium at 1,3,6,12,24 hours after reperfusion. SOM cluster analysis was used to identify different cluster of genes in which each cluster had similar expression pattern.Results Altogether 75, 779, 205, 155, and 166 genes were differentially expressed at 1, 3, 6, 12, 24 hours after the reperfusion respectively. Clusters analysis identified 12 clusters of genes in which each cluster had similar expression pattern. Conclusion Analysis of gene expression pattern revealed sequential induction of subsets of genes that characterize each response.

【基金】 国家重点基础研究发展规划项目 (973) (G2 0 0 0 0 5690 8) ;国家自然科学基金 (30 1 70 373)
  • 【分类号】R541
  • 【被引频次】7
  • 【下载频次】118
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