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DNA微阵列原位合成中的氧化剂体系改进

Improvement of Oxidizing Agent for DNA Microarray in situ Synthesis

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【作者】 聂立波肖鹏峰汤建新谭美君陈洪何农跃

【Author】 NIE Li-Bo1, XIAO Peng-Feng1, TANG Jian-Xin1, TAN Mei-Jun2, CHEN Hong 2,3, HE Nong-Yue 1* (1. Key Laboratory of Molecular and Biomolecular Electronics of Ministry of Education, Southeast University, Nanjing 210096, China; 2. Department of Packaging & Printing, Zhuzhou Institute of Technology, Zhuzhou 412008, China; 3. Department of Life Science and Technology, Central South Forestry University, Changsha 410004, China)

【机构】 东南大学分子与生物分子电子学教育部重点实验室株洲工学院包装印刷学院东南大学分子与生物分子电子学教育部重点实验室 南京210096南京210096株洲412008株洲412008中南林学院生命科学与技术学院长沙410004南京210096

【Abstract】 The phosphorous amide approach is of the highest coupling efficiency among the DNA in situ synthesis approaches at present. The strict anhydrous condition is required in the process of DNA in situ synthesis, and the DNA synthesis in the molecular stamp method must be performed in the anhydrous glove box. Because various volatile reagents remain in the glove box, the reagent gases invade into the coupling reaction system so that the coupling efficiency is decreased. This decrease is caused by the pyridine contained in the oxidizing agent. An improved oxidizing agent system of I 2/Ac 2O/AcOH/THF for the synthesis of oligodeoxy-nucleotides was reported. Using this oxidizing agent, 16-mer oligodeoxynucleotide probes were successfully synthesized on the CPG(controlled pore size glass) or the modified glass slide and a single step coupling efficiency of 98.2% was achieved. The synthesized DNA probes were hybridized with fluorescence and gold-labeled target oligodeoxynucleotides respectively. The fluorescence intensity and gray level for the synthesized probes in the I 2/Ac 2O/AcOH/THF oxidizing agent were similar to those in the traditional phosphorous amide approach possessing a water- and pyridine-containing oxidizing agent I 2/H 2O/Pyridine/THF. The reported oxidizing agent will make the contact printing approach to in situ synthesized DNA microarrays more feasible by eliminating the decrease of coupling efficiency which is because the cross reagent interfering arises from pyridine and water.

【基金】 国家自然科学基金 (批准号 :60 0 710 0 1);国家高技术研究发展计划 (批准号 :2 0 0 3 AA3 0 2 2 70 );教育部跨世纪优秀人才培养计划资助
  • 【文献出处】 高等学校化学学报 ,Chemical Research In Chinese Universities , 编辑部邮箱 ,2004年09期
  • 【分类号】Q789
  • 【下载频次】87
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