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霍乱弧菌VPI毒力岛的tcpI-P和tcpH-A间隔区序列在不同菌株中的差异分析

Diversity Analysis of Intergenic Sequence of TcpI-P and TcpH-A within VPI in Dif ferent Vibrio Cholerae Strains

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【作者】 赵英伟阚飙芮勇宇高守一刘延清卢明俊

【Author】 ZHAO Ying-wei ,KAN Biao,RUI Yong-yu,et al Public Health College of Harbin Medical University,Harbin 150001,China

【机构】 哈尔滨医科大学中国疾病预防控制中心传染病预防控制所第一军医大学热带军队卫生学系哈尔滨医科大学 哈尔滨150001哈尔滨150001

【摘要】 目的 TcpA是霍乱弧菌主要定居因子毒素共调菌毛的主要亚单位 ,基因位于VPI毒力岛上。古典生物型和ElTor生物型霍乱弧菌菌株的tcpA序列有较大差异 ,同时毒力岛上其他一些区域 ,主要包括部分基因的间隔区序列也存在差异。我们已在不同ElTor流行株与非流行株以及非O1/非O13 9菌株中又发现 4种新的tcpA序列。笔者拟探明这 4种不同类型tcpA序列的菌株中 ,VPI毒力岛上其他几个差异片段 (tcpI -P间隔区和tcpH -A间隔区 )是否与相应tcpA序列有平行的变异关系、进而分析毒力岛和菌株分化的多样性。方法 在tcpI-P和tcpH -A间隔区外侧保守区中设计引物 ,扩增包含这两个间隔区的片段并进行测序 ,计算比较序列差异。结果 基因tcpH与tcpA之间的间隔区序列两两间比较的一致性在 63 3 %至 95 3 %之间 ;基因tcpI与tcpP之间的间隔区序列两两间比较的一致性在 2 6 7%至 10 0 %之间。这些间隔区序列并没有像tcpA序列在这些菌株中的差异那样显示出类似的变异水平 ,甚至一些菌株的tcpA序列有较大差异时、某些区域反而高度一致。结论 在不同tcpA序列的菌株中tcpI-P间隔区和tcpH -A间隔区及tcpA这三个片段分化变异的速率不同 ,并不具有平行性。这些序列的多样性反映了霍乱弧菌VPI毒力岛以及菌株分化的多样性。这种分化也提?

【Abstract】 Objective TcpA is the major su bunit of toxin-coregulated pili,the critical colonization factor of Vibrio chole rae tcpA gene,which locates in Vibrio Pathogenicity Island(VPI),is obviously d i fferent in nucleotide sequence between the strains of classical and El Tor bioty pes It has been showed that some other loci in VPI,including some intergentic s equence(spacer),are also diverse in their sequences We have found 4 novel tcpA sequences from different El Tor strains and non-O1/non-O139 strains In this st u dy we try to determine if the diverse of the spacer sequences of tcpI-P and tcpH -A were parallel with that of the tcpA sequences, and to evaluate the differenti ation of VPI and strains Methods The spac ers of tcpI-P and tcpH-A were amplified,the PCR products were purified and direc tly sequenced The sequences comparison was made by phylogenesis analysis Results The identity of tcpH-A and tcpI-P spacers in different strains are 63 3%-95 3% and 26 7%-100%,respectively,a nd doesn’t show similar variation of tcpA Furthermore,in some strains though the tcpA is far more diverse,the spacers are identical instead Conclusion The rates of the variation of t cpA,tcpI-P and tcpH-A spacers were not in parallel each other,and the polymorphi sm of these sequences showed the high diversity of VPI These differentiations m ay suggest that these regions are possibly involved in binding with some signal regulators,and responding to environmental signals in different ways and at diff erent levels

【关键词】 霍乱弧菌毒力岛毒力共调菌毛分化
【Key words】 TcpAVibrio choleraeIntergeni c sequenceVPIDiversitye
【基金】 国家重大疾病基础研究 ( 973)项目 (G1 9990 541 0 2 )资助
  • 【文献出处】 中国预防医学杂志 ,China Preventive Medicine , 编辑部邮箱 ,2003年02期
  • 【分类号】R346
  • 【被引频次】2
  • 【下载频次】76
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