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采用基因芯片检出一例丙型肝炎病毒3b基因亚型的报告

A Genotype 3,Subtype 3b of Hepatit is C Virus Found in Wuhan by Using Gene Chip

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【作者】 文继开; 张香玲; 周亚凤; 王建春; 张治平; 张先恩;

【Author】 WEN Ji-kai1,ZHANG Xiang-ling2,ZHOU Ya-feng1,WANG Jian-chun2,ZHANG Zhi -ping1 ZHANG Xian-en1 (1Wuhan Institute of Virology,Chi nese Academy of Sciences;Wuhan 430 071,China;2Associate Hospital of Wuhan Iron and Steel(Group)Corpora tion;Wuhan 430080,China)

【机构】 中国科学院武汉病毒研究所; 武汉钢铁集团职工总医院; 中国科学院武汉病毒研究所 武汉 430071; 武汉 430080; 武汉 430071; 武汉 430071;

【Abstract】 1b and 2a HCV subtypes we re mainly reported in ChinaHerein ,a 3b subtype strain of HCV was fo und with gene chip methodFirstly, the 5’ NCR(non-coding region)was s elected as target sequence,and 171 related sequences in GeneBank wer e alignedAccording to the alignme nt results,eleven DNA probes were acquired and oligonucleotide array s were constructed for distinguish ing the HCV main genotypes and sub types,which did not contain specif ic probes of genotypes 4 and 5,but genotype 1, subtypes 1a/1c and 1b, genotype 2,subtypes 2a/2c and 2b,g enotype 3,subtypes 3a and 3b and g enotype 6,subtype 6aSecondly,foll owing reverse transcription of HCV RNA,nested-PCR was applied to harv est the 260 bp target DNA fragment approximatelyAfter specific ampli fication of target DNA and array h ybridization,the solid phase alkal ine phosphatase reaction indicated visually the results that the DNA fragment contains specific sequenc e of genotype 3 and subtype 3bBy sequencing the target DNA fragment ,and analyzing the sequence,it con firmed that HCV containing in the p ositive blood of the patient is gen otype 3 and subtype 3b

【关键词】 HCV; genotype; subtype; g ene chip;
【Key words】 HCV; genotype; subtype; g ene chip;
  • 【文献出处】 病毒学报 ,Chinese Journal of Virology , 编辑部邮箱 ,2003年03期
  • 【分类号】R346
  • 【被引频次】3
  • 【下载频次】70
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