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遗传密码子和氨基酸若干物理化学特性的相关性研究

Correlation Analysis of Some Physical Chemistry Properties among Genetic Codons and Amino Acids

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【作者】 马飞武耀廷许晓风

【Author】 MA Fei~1,WU Yao-Ting~2,XU Xiao-Feng~3(1.Institute of Bioinformatics,Tsinghua University,Beijing 100084;2.Institute of Biochemistry and Molecular Biology, Department of Biological Sciences and Biotechnology,Tsinghua University;3.Life Science,College Nanjing Normal University Nanjing)

【机构】 清华大学生物信息学研究所清华大学生物科学与技术系生物化学与分子生物学研究所南京师范大学生命科学学院 北京100084

【摘要】 为了揭示密码子性质与氨基酸性质之间可能存在的内在联系,系统地考察了密码子的分子量、亲水性、碱基堆积力和π电子共振能以及氨基酸的分子量、等电点、相对距离、不可取代性和同义密码子数等特性,并对这些性质间可能存在的相关性进行了分析。结果显示,在密码子、氨基酸以及密码子与氨基酸的多项性质间均存在着显著的正相关或负相关。此外,根据密码子的4种特性对20种蛋白质氨基酸进行了分类,这可能在某种程度上真实地反映了密码子与氨基酸的对应联系。文中还对这些内在相关性的可能意义进行了讨论。

【Abstract】 The origin and evolution of the genetic code is a most interesting yet challenging problem for understanding life phenomena. To reveal the internal relations of the physical chemistry properties among genetic codons and amino acids,some important characters of codons molecular weight (MW), water affinity, base force and π energy, and those of amino acids with molecular weight, pI value, relative distance,no substitution and synonymous codon number were investigated.The correlations in these properties were performed using statistical analysis method. The results indicated that there are close relationships not only between the four properties of genetic codons but also between the five properties of amino acids as well as between codon properties and corresponding amino acids ones. In addition, the 20 kinds of amino acid could be classified into four groups based on four properties of codons, which may reflect the veritably corresponding relationships between codons and amino acids to some extent. Finally, the meaning of the internal relations among genetic codons and amino acids characters was discussed. It is clear that comprehending these correlations could provide unique vantage for elucidating co-evolutionary mechanisms between genetic codons and amino acids.

【关键词】 密码子氨基酸相关分析
【Key words】 genetic codonsamino acidscorrelation analysis
【基金】 中国博士后科学基金资助(200211)。
  • 【文献出处】 安徽农业大学学报 ,Journal of Anhui Agricultural University , 编辑部邮箱 ,2003年04期
  • 【分类号】Q75
  • 【被引频次】18
  • 【下载频次】329
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