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天花粉蛋白与FMP复合物的晶体结构
CRYSTAL STRUCTURE OF COMPLEX OF TCS WITH FMP
【摘要】 用浸泡法得到了天花粉蛋白(TCS)与FMP复合物的晶体,在SIMENNSX-200B面探测器系统上收集了一套2.0分辨率的X射线衍射数据。用同晶差值傅立叶法解析了复合物的结构,经X—PLOR程序修正得到了TCS—FMP复合物的分子结构并找出了197个水分子,最后的R因子为0.172,键长和键角的RMS偏差分别为0.015和2.922度。TCS—FMP复合物中,FMP与天花粉蛋白分子有较好的结合,其结合位置正处于根据三维结构和突变体信息推测的N一糖苷酶活性口袋之中。它的类嘌呤环夹在Y70和Y111两个侧链环之间,与Y70环近乎平行,其N7和N6分别与TCS分子的G1094羰基氧和I71的N成氢键,N3靠近R163的侧链,其磷酸根则伸向活性口袋的底部,与E189、E160和R163等残基作用。
【Abstract】 Trichosanthin (TCS) is representative of a large family of Ribosome Inactivating Proteins (RIPs). It is a N-glycosidase that catalytically hydrolyze the adenine ring from a specific adenosine of rRNA. In recent years it was discovered thta TCS is an anti-Human Immunodeficiency Virus (HIV) agent. The structures of P212121 and C2 form were determined at 1.73 and 2.7 respectively. Here we present our crystal stucture of TCS-FMP complex. obtained by soaking native TCS crystals in artificial mother liquor containing 20mg/ml FMP for 48 hours. Data were collected to 2.01 for the complex of TCS-FMP using a SIEMENS X-200B area detector system. Different Fourier method was applied to the structure determination of this complex and X-PLOR package was employed to its refinement. The structure of TCS-FMP was refined to R Factor of 0. 172 with RMS deviations of bond length 0.015 and bond angle 2.922. FMP binds to proteins at the proposed active region with its susceptible adenine ring stacking betWeen Y70 and Y111, and the phosphate group extends to the other end of the region. It forms at least six hydrogen bonds with TCS molecule.
【Key words】 Trichosanthin Complex Differnce Fourier method Active region;
- 【文献出处】 生物物理学报 ,ACTA BIOPHYSICA SINICA , 编辑部邮箱 ,1994年04期
- 【分类号】Q510.1
- 【被引频次】6
- 【下载频次】39